Workflow

The MOSAIK workflow is divided into two main parts:

  • Visualisation component - enables quality assessment of the immunofluorescence staining and verification of cell segmentation

  • Data integration component - optimises quality control and downstream analysis

  1. For visualisation, MOSAIK employs two strategies: Napari with the CosMx plugin for CosMx data and Xenium Explorer for Xenium data.

  2. For integration, MOSAIK converts the raw data into a Python object, faciliating quality control and facilitate downstream analysis.

By separating visualisation from integration, MOSAIK ensures flexibility: users can quickly assess data quality while also preparing it for deeper multimodal exploration.

Alternative text